miRBase entry: oha-mir-133b

Stem-loop oha-mir-133b


Accession
MI0031343
Description
Ophiophagus hannah oha-mir-133b precursor miRNA
Gene family
MIPF0000029; mir-133


Sequence

gcauugcucugGCUGGUCAAAAGGAACCAAGgccgucucuccuggaggUUUGGUCCCCUUCAACCAGCUAUagcagugcugaccuu
((((((((.((((((((..((.((.((((((.((.((......)).)))))))).)).))..)))))))).)))))))).......

Structure
-------        c        CA  A  A      g  g  uc 
       gcauugcu ugGCUGGU  AA GG ACCAAG cc uc  u
       |||||||| ||||||||  || || |||||| || ||   
       cgugacga AUCGACCA  UU CC UGGUUU gg gg  c
uuccagu        U        AC  C  C      -  a  uc 


Annotation confidence Not enough data
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Genome context
AZIM01001691.1: 30573-30658 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oha-mir-133b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oha-miR-133b-5p

Accession MIMAT0036701
Description Ophiophagus hannah oha-miR-133b-5p mature miRNA
Sequence 12 - GCUGGUCAAAAGGAACCAAG - 31
Evidence not_experimental

Mature oha-miR-133b-3p

Accession MIMAT0036702
Description Ophiophagus hannah oha-miR-133b-3p mature miRNA
Sequence 49 - UUUGGUCCCCUUCAACCAGCUAU - 71
Evidence not_experimental

References

  1. PubMed ID: 24297900
    The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
    "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
    "Proc Natl Acad Sci U S A (2013) 110:20651-20656