miRBase entry: oha-mir-133a-3

Stem-loop oha-mir-133a-3


Accession
MI0031344
Description
Ophiophagus hannah oha-mir-133a-3 precursor miRNA
Gene family
MIPF0000029; mir-133


Sequence

ugugcuccugggGCUGGUAAAAAGGAACCAGAucgacuggcgacugaUUUGGUCCCCUUCAACCAGCUGggggggcacaaa
(((((((((..(((((((..((.((.(((((((((.........))))))))).)).))..)))))))..)))))))))..

Structure
--         gg       AA  A  A         acu 
  ugugcuccu  gGCUGGU  AA GG ACCAGAucg   g
  |||||||||  |||||||  || || |||||||||   g
  acacggggg  UCGACCA  UU CC UGGUUUagu   c
aa         gG       AC  C  C         cag 


Annotation confidence Not enough data
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Genome context
AZIM01000323.1: 267287-267367 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oha-mir-133a-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oha-miR-133a-3p

Accession MIMAT0036699
Description Ophiophagus hannah oha-miR-133a-3p mature miRNA
Sequence 48 - UUUGGUCCCCUUCAACCAGCUG - 69
Evidence not_experimental

Mature oha-miR-133a-3-5p

Accession MIMAT0036703
Description Ophiophagus hannah oha-miR-133a-3-5p mature miRNA
Sequence 13 - GCUGGUAAAAAGGAACCAGA - 32
Evidence not_experimental

References

  1. PubMed ID: 24297900
    The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
    "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
    "Proc Natl Acad Sci U S A (2013) 110:20651-20656