miRBase entry: oha-mir-16b

Stem-loop oha-mir-16b


Accession
MI0031369
Description
Ophiophagus hannah oha-mir-16b precursor miRNA
Gene family
MIPF0000006; mir-15


Sequence

acuuguuccgcugUAGCAGCACGUAAAUAUUGGUGuaguaaagauaacgCCAAUAUUAUUGUGCUGCUUaagugugacaggga
.((((((.((((..(((((((((..(((((((((((.((....)).)))))))))))..)))))))))..)))).))))))..

Structure
-a      c    gU         UA           a  a 
  cuuguu cgcu  AGCAGCACG  AAUAUUGGUGu gu a
  |||||| ||||  |||||||||  ||||||||||| ||  
  ggacag guga  UCGUCGUGU  UUAUAACCgca ua a
ag      u    aU         UA           a  g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AZIM01000178.1: 249110-249192 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oha-mir-16b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oha-miR-16b-5p

Accession MIMAT0036746
Description Ophiophagus hannah oha-miR-16b-5p mature miRNA
Sequence 14 - UAGCAGCACGUAAAUAUUGGUG - 35
Evidence not_experimental

Mature oha-miR-16b-3p

Accession MIMAT0036747
Description Ophiophagus hannah oha-miR-16b-3p mature miRNA
Sequence 50 - CCAAUAUUAUUGUGCUGCUU - 69
Evidence not_experimental

References

  1. PubMed ID: 24297900
    The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
    "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
    "Proc Natl Acad Sci U S A (2013) 110:20651-20656