miRBase entry: oha-mir-17

Stem-loop oha-mir-17


Accession
MI0031372
Description
Ophiophagus hannah oha-mir-17 precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

ucauguuagaauaauguCAAAGUGCUUACAGUGCAGGUAGUgauuuauagaaccuACUGCAGUGAAGGCACUUGUAGcauuaugcuggcaag
...((((((.(((((((..((((((((.((.(((((...((..........))...))))).)).))))))))...))))))).))))))..

Structure
uca      a       -CA        A  G     GUA  gauu 
   uguuag auaaugu   AAGUGCUU CA UGCAG   GU    u
   |||||| |||||||   |||||||| || |||||   ||     
   acgguc uauuacG   UUCACGGA GU ACGUC   ca    a
-ga      g       AUG        A  G     Auc  agau 


Annotation confidence Not enough data
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Genome context
AZIM01002132.1: 158388-158479 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from oha-mir-17
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oha-miR-17-5p

Accession MIMAT0036751
Description Ophiophagus hannah oha-miR-17-5p mature miRNA
Sequence 18 - CAAAGUGCUUACAGUGCAGGUAGU - 41
Evidence not_experimental

Mature oha-miR-17-3p

Accession MIMAT0036752
Description Ophiophagus hannah oha-miR-17-3p mature miRNA
Sequence 56 - ACUGCAGUGAAGGCACUUGUAG - 77
Evidence not_experimental

References

  1. PubMed ID: 24297900
    The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
    "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
    "Proc Natl Acad Sci U S A (2013) 110:20651-20656