miRBase entry: oha-mir-19a

Stem-loop oha-mir-19a


Accession
MI0031395
Description
Ophiophagus hannah oha-mir-19a precursor miRNA
Gene family
MIPF0000011; mir-19


Sequence

uuuugcagucuucuguUAGUUUUGCAUAGUUGCACUAcaggaagaauguaguUGUGCAAAUCUAUGCAAAACUGAuuguggccuguuauu
....((((.((.(.(((((((((((((((((((((((((.......))))...))))))..))))))))))))))).).)).))))....

Structure
uuuu    u  u u               --      ---    gg 
    gcag cu c guUAGUUUUGCAUAG  UUGCAC   UAca  a
    |||| || | |||||||||||||||  ||||||   ||||  a
    uguc gg g uAGUCAAAACGUAUC  AACGUG   augu  g
uuau    c  u u               UA      Uug    aa 


Annotation confidence Not enough data
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Genome context
AZIM01002132.1: 158114-158203 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from oha-mir-19a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oha-miR-19a-5p

Accession MIMAT0036795
Description Ophiophagus hannah oha-miR-19a-5p mature miRNA
Sequence 17 - UAGUUUUGCAUAGUUGCACUA - 37
Evidence not_experimental

Mature oha-miR-19a-3p

Accession MIMAT0036796
Description Ophiophagus hannah oha-miR-19a-3p mature miRNA
Sequence 53 - UGUGCAAAUCUAUGCAAAACUGA - 75
Evidence not_experimental

References

  1. PubMed ID: 24297900
    The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
    "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
    "Proc Natl Acad Sci U S A (2013) 110:20651-20656