miRBase entry: oha-mir-23b

Stem-loop oha-mir-23b


Accession
MI0031431
Description
Ophiophagus hannah oha-mir-23b precursor miRNA
Gene family
MIPF0000027; mir-23


Sequence

uuuugguuguuUGGGUUCCUGGCAUGCUGAUUUgugauuuaagauuaaaAUCACAUUGCCAGGGAUUACCACauaaccgugac
....((((((.(((((((((((((((.((((((.(((((...))))))))))))).))))))))))..))).)))))).....

Structure
-uuuu      u   --          -  C      g     u 
     gguugu UGG  GUUCCUGGCA UG UGAUUU ugauu  
     |||||| |||  |||||||||| || |||||| ||||| a
     ccaaua ACC  UAGGGACCGU AC ACUAaa auuag  
cagug      C   AU          U  -      -     a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AZIM01002605.1: 297373-297455 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from oha-mir-23b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oha-miR-23b-5p

Accession MIMAT0036856
Description Ophiophagus hannah oha-miR-23b-5p mature miRNA
Sequence 12 - UGGGUUCCUGGCAUGCUGAUUU - 33
Evidence not_experimental

Mature oha-miR-23b-3p

Accession MIMAT0036857
Description Ophiophagus hannah oha-miR-23b-3p mature miRNA
Sequence 50 - AUCACAUUGCCAGGGAUUACCAC - 72
Evidence not_experimental

References

  1. PubMed ID: 24297900
    The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
    "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
    "Proc Natl Acad Sci U S A (2013) 110:20651-20656