miRBase entry: oha-mir-30b

Stem-loop oha-mir-30b


Accession
MI0031451
Description
Ophiophagus hannah oha-mir-30b precursor miRNA
Gene family
MIPF0000005; mir-30


Sequence

uguuaguucgUGUAAACAUCCUACACUCAGCUuuuaucccaugaaauggCUGGGGGAUGGAAGUUCACUUCaacugauuuggaaagac
.(((((((...((.(((.(((....((((((((((((...)))))..)))))))....))).))).))...)))))))..........

Structure
---------u       cgU  A   A   UACA       --     c 
          guuaguu   GU AAC UCC    CUCAGCU  uuuau  
          |||||||   || ||| |||    |||||||  ||||| c
          uagucaa   CA UUG AGG    GGGUCgg  aagua  
cagaaagguu       CUU  C   A   UAGG       ua     c 


Annotation confidence Not enough data
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Genome context
AZIM01004649.1: 75289-75376 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oha-mir-30b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oha-miR-30b-5p

Accession MIMAT0036890
Description Ophiophagus hannah oha-miR-30b-5p mature miRNA
Sequence 11 - UGUAAACAUCCUACACUCAGCU - 32
Evidence not_experimental

Mature oha-miR-30b-3p

Accession MIMAT0036891
Description Ophiophagus hannah oha-miR-30b-3p mature miRNA
Sequence 50 - CUGGGGGAUGGAAGUUCACUUC - 71
Evidence not_experimental

References

  1. PubMed ID: 24297900
    The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
    "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
    "Proc Natl Acad Sci U S A (2013) 110:20651-20656