miRBase entry: ssc-mir-378b

Stem-loop ssc-mir-378b


Accession
MI0031641
Description
Sus scrofa ssc-mir-378b precursor miRNA

Literature search
20 open access papers mention ssc-mir-378b
(97 sentences)

Sequence

5 reads, 9 reads per million, 3 experiments
uugagcuacauuugcuugcguucucuaagugucuggcugaaaacgcACUGGACUUGGAGUCAGAAGUugagguuccu
..(((((.((...((((.(...((((((((.(...((.......))...).))))))))...))))))).)))))..

Structure
uu     a  uuu    g guu        g cug  ug 
  gagcu ca   gcuu c   cucuaagu u   gc  a
  ||||| ||   |||| |   |||||||| |   ||  a
  cuugg gu   UGAA G   GAGGUUCA G   cg  a
uc     a  ---    - ACU        G UCA  ca 


Annotation confidence Not enough data
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Genome context
chr1: 284932187-284932263 [-]

Database links

Mature ssc-miR-378b-3p

Accession MIMAT0037082
Description Sus scrofa ssc-miR-378b-3p mature miRNA
Sequence 47 - ACUGGACUUGGAGUCAGAAGU - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100