miRBase entry: ssc-mir-96

Stem-loop ssc-mir-96


Accession
MI0031644
Description
Sus scrofa ssc-mir-96 precursor miRNA
Gene family
MIPF0000072; mir-96

Literature search
4 open access papers mention ssc-mir-96
(5 sentences)

Sequence

422 reads, 220 reads per million, 12 experiments
cugggccgauUUUGGCACUAGCACAUUUUUGCUugugucucuccgcucugagcaauuaugugcagugccaauaugggaaagcagg
(((..((.((.((((((((.((((((..(((((((((......)))...))))))..)))))))))))))).)).))....))).

Structure
-   --gg  g  U        A      UU      ---   uc 
 cug    cc au UUGGCACU GCACAU  UUGCUu   gug  u
 |||    || || |||||||| ||||||  ||||||   |||   
 gac    gg ua aaccguga cgugua  aacgag   cgc  c
g   gaaa  g  u        -      uu      ucu   cu 


Annotation confidence Not enough data
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Genome context
chr18: 20030888-20030972 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ssc-mir-96
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-96-5p

Accession MIMAT0037085
Description Sus scrofa ssc-miR-96-5p mature miRNA
Sequence 11 - UUUGGCACUAGCACAUUUUUGCU - 33
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100