Stem-loop sequence ata-MIR167c

Accession

MI0031646 (change log)

Description

Aegilops tauschii miR167c stem-loop

Gene family

MIPF0000023; MIR167_1

Literature search

1 open access papers mention ata-MIR167c
(12 sentences)

Stem-loop

   -  u   u      a    c   -         c uuu       uuc 
5'  ug gaa gaguga gcug cag caugaucua c   gauucgc   u
    || ||| |||||| |||| ||| ||||||||| |   |||||||    
3'  ac cuu uuuacu cgac guc guacuagau g   cuaagug   g
   g  c   c      c    a   a         u uuc       ugc 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (ASM34733v2; GCA_000347335.2): chr5: 62968615-62968710 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ata-MIR167c

• ata-MIR167c: chr5: 62968615-62968710 [-]
• ata-MIR167b: chr5: 62966137-62966233 [-]

Database links

• miRBase Tracker:MI0031646

Mature sequence ata-miR167c-5p

• Accession: MIMAT0037088
• Sequence: 11 - ugaagcugccagcaugaucua - 31
• Evidence: experimental; Illumina [1]

Mature sequence ata-miR167c-3p

• Accession: MIMAT0037089
• Sequence: 66 - gaucaugacugacagccucauu - 87
• Evidence: experimental; Illumina [1]

References

1. PMID:23535592 "Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation" Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu Nature. 496:91-95(2013).