Stem-loop sequence ata-MIR167a

Accession

MI0031648 (change log)

Description

Aegilops tauschii miR167a stem-loop

Gene family

MIPF0000023; MIR167_1

Literature search

1 open access papers mention ata-MIR167a
(12 sentences)

Stem-loop

   --  a     c         - -               cuuga   -a  uag 
5'   ag gaaag gugaagcug c cagcaugaucuaacu     acc  gc   c
     || ||||| ||||||||| | |||||||||||||||     |||  ||    
3'   uc cuuuc cacuuugac g gucgugcuagauugg     ugg  cg   u
   ug  c     c         a u               -----   gg  ccu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM34733v2; GCA_000347335.2): chr5: 355725741-355725838 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0031648

Mature sequence ata-miR167a-5p

• Accession: MIMAT0037092
• Sequence: 11 - ugaagcugccagcaugaucua - 31
• Evidence: experimental; Illumina [1]

Mature sequence ata-miR167a-3p

• Accession: MIMAT0037093
• Sequence: 66 - gaucgugcugugacaguuucacc - 88
• Evidence: experimental; Illumina [1]

References

1. PMID:23535592 "Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation" Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu Nature. 496:91-95(2013).