miRBase entry: ata-MIR171c

Stem-loop ata-MIR171c


Accession
MI0031652
Description
Aegilops tauschii ata-MIR171c precursor miRNA
Gene family
MIPF0000030; MIR171_1


Sequence

aggggagugaacgCGGUAUUGGUGCGGUUCAAUCagagagcuggugccccaggaggcaagggguuccucccuucgaUUGAGCCGUGCCAAUAUCACGcgguuucuc
.(((((.((..((.((((((((((((((((((((.(((.(..((.(((((.........))))).))..)))).)))))))))))))))))))).)))).))))).

Structure
a     g  aa  C                    a   a cu  u     agg 
 gggga ug  cg GGUAUUGGUGCGGUUCAAUC gag g  gg gcccc   a
 ||||| ||  || |||||||||||||||||||| ||| |  || |||||   g
 ucuuu gc  GC CUAUAACCGUGCCGAGUUag uuc c  cc ugggg   g
c     g  --  A                    c   - cu  u     aac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr2: 484289195-484289300 [-]

Database links

Mature ata-miR171c-5p

Accession MIMAT0037100
Description Aegilops tauschii ata-miR171c-5p mature miRNA
Sequence 14 - CGGUAUUGGUGCGGUUCAAUC - 34
Evidence experimental
Illumina [1]

Mature ata-miR171c-3p

Accession MIMAT0037101
Description Aegilops tauschii ata-miR171c-3p mature miRNA
Sequence 77 - UUGAGCCGUGCCAAUAUCACG - 97
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95