miRBase entry: ata-MIR160b

Stem-loop ata-MIR160b


Accession
MI0031653
Description
Aegilops tauschii ata-MIR160b precursor miRNA
Gene family
MIPF0000032; MIR160


Sequence

ugauaugaugUGCCUGGCUCCCUGUAUGCCAcucauccagagcaacaccuuuugcaauaagguugccugcgauggaugGCGUGCACGGAUCCAAGCAUAucgaaccc
......(((((((.(((.(((.(((((((((.((((((((.(((..(((((.......))))))))))).))))).))))))))).))).))).)))))))......

Structure
ugauau       C   C   C         c     -   a   ac     uu 
      gaugUGC UGG UCC UGUAUGCCA ucauc cag gca  accuu  g
      ||||||| ||| ||| ||||||||| ||||| ||| |||  |||||  c
      cuAUACG ACC AGG ACGUGCGgu gguag guc cgu  uggaa  a
cccaag       A   U   C         a     c   -   --     ua 


Annotation confidence Not enough data
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Genome context
chr7: 246894274-246894380 [+]

Database links

Mature ata-miR160b-5p

Accession MIMAT0037102
Description Aegilops tauschii ata-miR160b-5p mature miRNA
Sequence 11 - UGCCUGGCUCCCUGUAUGCCA - 31
Evidence experimental
Illumina [1]

Mature ata-miR160b-3p

Accession MIMAT0037103
Description Aegilops tauschii ata-miR160b-3p mature miRNA
Sequence 79 - GCGUGCACGGAUCCAAGCAUA - 99
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95