Stem-loop ata-MIR167e

Accession

MI0031656

Description

Aegilops tauschii ata-MIR167e precursor miRNA

Gene family

MIPF0000023; MIR167_1

Literature search

1 open access papers mention ata-MIR167e
(12 sentences)

Sequence

agggaacgagUGAAGCUGCCAGCAUGAUCUAgcuccgagugaucaaacaagaaaagcuuguugauucaagcucuuguggucaugccuugcuaGGUCAUGCUGCGGCAGCCUCACUucuucccgcc
.(((((.((((((.(((((((((((((((((((.....((((((..((((((...(((((......))))))))))))))))).....)))))))))))))..)))))).)))))).)))))...

Structure

--a     c      A      --             uccga      aa      aaa     uu 
   gggaa gagUGA GCUGCC  AGCAUGAUCUAgc     gugauc  acaaga   gcuug  g
   ||||| |||||| ||||||  |||||||||||||     ||||||  ||||||   |||||   
   cccuu uUCACU CGACGG  UCGUACUGGaucg     uacugg  uguucu   cgaac  a
ccg     c      C      CG             uuccg      --      ---     uu 

Annotation confidence Not enough data

Genome context

chr5: 392778390-392778514 [-]

Mature ata-miR167e-5p

• Accession: MIMAT0037108
• Description: Aegilops tauschii ata-miR167e-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUA - 31
• Evidence: experimental ; Illumina [1]

Mature ata-miR167e-3p

• Accession: MIMAT0037109
• Description: Aegilops tauschii ata-miR167e-3p mature miRNA
• Sequence: 93 - GGUCAUGCUGCGGCAGCCUCACU - 115
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95