Stem-loop ata-MIR390

Accession

MI0031673

Description

Aegilops tauschii ata-MIR390 precursor miRNA

Gene family

MIPF0000101; MIR390

Sequence

acaauccuugAAGCUCAGGAGGGAUAGCGCCuagguuuauugcaaccagcaagagaccgaccggccggccggccggcucuugaugguucaucgaucuguucguccgaagCGCUAUCUAUCCUGAGCUCCacgguuuguu
((((.((.((.(((((((((.(((((((((.((((((...((.(((((.((((((.(((.((((....)))).))))))))).)))))))..))))))(((....)))))))))))).))))))))).)).)).)))).

Structure

-    u  u  A         G         ---------C      uau  c     g      a   a    c 
 acaa cc ug AGCUCAGGA GGAUAGCGC          uagguu   ug aacca caagag ccg ccgg c
 |||| || || ||||||||| |||||||||          ||||||   || ||||| |||||| ||| ||||  
 uguu gg aC UCGAGUCCU UCUAUCGCg          gucuag   ac uuggu guucuc ggc ggcc g
u    u  c  C         A         aagccugcuu      -cu  -     a      -   c    g 

Annotation confidence Not enough data

Genome context

chr5: 417415781-417415919 [-]

Mature ata-miR390-5p

• Accession: MIMAT0037140
• Description: Aegilops tauschii ata-miR390-5p mature miRNA
• Sequence: 11 - AAGCUCAGGAGGGAUAGCGCC - 31
• Evidence: experimental ; Illumina [1]

Mature ata-miR390-3p

• Accession: MIMAT0037141
• Description: Aegilops tauschii ata-miR390-3p mature miRNA
• Sequence: 110 - CGCUAUCUAUCCUGAGCUCC - 129
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95