Stem-loop ata-MIR5181

Accession

MI0031675

Description

Aegilops tauschii ata-MIR5181 precursor miRNA

Gene family

MIPF0001200; MIR5067

Literature search

1 open access papers mention ata-MIR5181
(1 sentences)

Sequence

uugaacuaccUCCGAUCCAGAAUAAGUGUCGcaguuuugaacuaacgccuaguucaaaacugcgaCACUUAUUUUGGACCGGAGGGaguaauguuu
....(((.((((((.(((((((((((((((((((((((((((((.....))))))))))))))))))))))))))))).)))))).))).......

Structure

---uuga   a      A                             a 
       acu ccUCCG UCCAGAAUAAGUGUCGcaguuuugaacua c
       ||| |||||| ||||||||||||||||||||||||||||| g
       uga GGAGGC AGGUUUUAUUCACagcgucaaaacuugau c
uuuguaa   G      C                             c 

Annotation confidence Not enough data

Genome context

chr2: 141170818-141170913 [+]

Mature ata-miR5181-5p

• Accession: MIMAT0037144
• Description: Aegilops tauschii ata-miR5181-5p mature miRNA
• Sequence: 11 - UCCGAUCCAGAAUAAGUGUCG - 31
• Evidence: experimental ; Illumina [1]

Mature ata-miR5181-3p

• Accession: MIMAT0037145
• Description: Aegilops tauschii ata-miR5181-3p mature miRNA
• Sequence: 66 - CACUUAUUUUGGACCGGAGGG - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95