miRBase entry: ata-MIR169b

Stem-loop ata-MIR169b


Accession
MI0031676
Description
Aegilops tauschii ata-MIR169b precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
1 open access papers mention ata-MIR169b
(1 sentences)

Sequence

acaucuucgaUAGCCAAGGAUGAUUUGCCUGUGaaccucccccgggagcccagcucucgggaaccugguuccaUGGGCAAGUCAUCCUGGCUACCCaaguacc
....(((.(.((((((.((((((((((((((((((((...(((((((((...))))))))).....)))).)))))))))))))))))))))).).)))....

Structure
acau   c a      A                -    --ucc         c 
    cuu g UAGCCA GGAUGAUUUGCCUGUG aacc     cccgggagc  
    ||| | |||||| |||||||||||||||| ||||     ||||||||| c
    gaa C AUCGGU CCUACUGAACGGGUac uugg     gggcucucg  
ccau   C C      -                c    uccaa         a 


Annotation confidence Not enough data
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Genome context
chr5: 446365443-446365545 [-]

Database links

Mature ata-miR169b-5p

Accession MIMAT0037146
Description Aegilops tauschii ata-miR169b-5p mature miRNA
Sequence 11 - UAGCCAAGGAUGAUUUGCCUGUG - 33
Evidence experimental
Illumina [1]

Mature ata-miR169b-3p

Accession MIMAT0037147
Description Aegilops tauschii ata-miR169b-3p mature miRNA
Sequence 74 - UGGGCAAGUCAUCCUGGCUACCC - 96
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95