Stem-loop ata-MIR172b

Accession

MI0031677

Description

Aegilops tauschii ata-MIR172b precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

1 open access papers mention ata-MIR172b
(2 sentences)

Sequence

ucuugcagguGCAGCACCACCAAGAUUCACAucggauccgucguaaaaucaaauuuaugcgacgcgccaggugaugAGAAUCUUGAUGAUGCUGCAUcagcaggcac
.(((((.(((((((((.((.((((((((.(((((...((((((((.((......)).))))))).).....))))).)))))))).)).))))))))).)))))...

Structure

--u     a         C  C        A     --gau -       a  uc 
   cuugc gguGCAGCA CA CAAGAUUC CAucg     c cgucgua aa  a
   ||||| ||||||||| || |||||||| |||||     | ||||||| ||   
   ggacg cUACGUCGU GU GUUCUAAG guagu     g gcagcgu uu  a
cac     a         A  A        A     ggacc c       a  ua 

Annotation confidence Not enough data

Genome context

chr6: 363849505-363849611 [-]

Mature ata-miR172b-5p

• Accession: MIMAT0037148
• Description: Aegilops tauschii ata-miR172b-5p mature miRNA
• Sequence: 11 - GCAGCACCACCAAGAUUCACA - 31
• Evidence: experimental ; Illumina [1]

Mature ata-miR172b-3p

• Accession: MIMAT0037149
• Description: Aegilops tauschii ata-miR172b-3p mature miRNA
• Sequence: 77 - AGAAUCUUGAUGAUGCUGCAU - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95