miRBase entry: ata-MIR168

Stem-loop ata-MIR168


Accession
MI0031679
Description
Aegilops tauschii ata-MIR168 precursor miRNA
Gene family
MIPF0000081; MIR168


Sequence

cgccucgggcUCGCUUGGUGCAGAUCGGGACccucagcccgccccgacgggccggauCCCGCCUUGCACCAAGUGAAUcggagccggc
((.(((.((.(((((((((((((..(((((.((...(((((......))))).)).)))))..))))))))))))).)).))).))..

Structure
--  c   g  c             AU     C  uca     cc 
  cg cuc gg UCGCUUGGUGCAG  CGGGA cc   gcccg  c
  || ||| || |||||||||||||  ||||| ||   |||||   
  gc gag cU AGUGAACCACGUU  GCCCu gg   cgggc  c
cg  c   g  A             CC     a  --c     ag 


Annotation confidence Not enough data
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Genome context
chr6: 52832588-52832675 [+]

Database links

Mature ata-miR168-5p

Accession MIMAT0037152
Description Aegilops tauschii ata-miR168-5p mature miRNA
Sequence 11 - UCGCUUGGUGCAGAUCGGGAC - 31
Evidence experimental
Illumina [1]

Mature ata-miR168-3p

Accession MIMAT0037153
Description Aegilops tauschii ata-miR168-3p mature miRNA
Sequence 58 - CCCGCCUUGCACCAAGUGAAU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95