Stem-loop ata-MIR166d

Accession

MI0031682

Description

Aegilops tauschii ata-MIR166d precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

1 open access papers mention ata-MIR166d
(1 sentences)

Sequence

cguuuugaggGGAAUGUUGUCUGGCUCGGGGcucucuuucuuucucucucucuauccuccuccccucgaccccuccuugaucagaucgagagaaaggucgaagauccgaugaggggggagaagagaguagacgugcguagaucUCGGACCAGGCUUCAUUCCCCccaaagacaa
..(((((.((((((((..((((((.((((((.(((.......(((((((((((.((((((((..(((((((..((((((((...)))))).))..))))))......)..)))))))))).)))))).))).......))))))))).))))))..)))))))).)))))....

Structure

--cg     a        UU      C      c   cuuucuu   -      -  a        cc ------      cc  -      c 
    uuuug ggGGAAUG  GUCUGG UCGGGG ucu       ucu cucucu cu uccuccuc  c      ucgacc  uc cuugau  
    ||||| ||||||||  |||||| |||||| |||       ||| |||||| || ||||||||  |      ||||||  || |||||| a
    gaaac CCCCUUAC  CGGACC GGCUcu aga       aga gagaga ga ggggggag  g      agcugg  ag gagcua  
aaca     c        UU      A      -   ugcgugc   u      a  -        ua ccuaga      aa  a      g 

Annotation confidence Not enough data

Genome context

chr7: 355440137-355440310 [-]

Mature ata-miR166d-5p

• Accession: MIMAT0037158
• Description: Aegilops tauschii ata-miR166d-5p mature miRNA
• Sequence: 11 - GGAAUGUUGUCUGGCUCGGGG - 31
• Evidence: experimental ; Illumina [1]

Mature ata-miR166d-3p

• Accession: MIMAT0037159
• Description: Aegilops tauschii ata-miR166d-3p mature miRNA
• Sequence: 144 - UCGGACCAGGCUUCAUUCCCC - 164
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95