Stem-loop ata-MIR396d

Accession

MI0031683

Description

Aegilops tauschii ata-MIR396d precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

1 open access papers mention ata-MIR396d
(1 sentences)

Sequence

gggcaugcucUCCACAGGCUUUCUUGAACUGugaacucgcggggauggggauucccuggauuguggcgcuccugccuucucuucggccgucuccgccuguugaugGUUCAAGAAAGCCCAUGGAAAccaugcccgc
(((((((...((((..((((((((((((((((.(((..((((((((((.......(((((..(.(((......)))..)..)))))))))))))))..))).))))))))))))))))..))))...)))))))..

Structure

--       cuc    CA                g   uc          ggauucc     uu -u   gc 
  gggcaug   UCCA  GGCUUUCUUGAACUGu aac  gcggggaugg       cugga  g  ggc  u
  |||||||   ||||  |||||||||||||||| |||  ||||||||||       |||||  |  |||   
  cccguac   AGGU  CCGAAAGAACUUGgua uug  cgccucugcc       ggcuu  c  ccg  c
cg       cAA    AC                g   uc          -------     cu uu   uc 

Annotation confidence Not enough data

Genome context

chr2: 543706926-543707061 [-]

Mature ata-miR396d-5p

• Accession: MIMAT0037160
• Description: Aegilops tauschii ata-miR396d-5p mature miRNA
• Sequence: 11 - UCCACAGGCUUUCUUGAACUG - 31
• Evidence: experimental ; Illumina [1]

Mature ata-miR396d-3p

• Accession: MIMAT0037161
• Description: Aegilops tauschii ata-miR396d-3p mature miRNA
• Sequence: 106 - GUUCAAGAAAGCCCAUGGAAA - 126
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95