Stem-loop ata-MIR396c

Accession

MI0031688

Description

Aegilops tauschii ata-MIR396c precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

1 open access papers mention ata-MIR396c
(1 sentences)

Sequence

ugccaugccuUUCCACAGCUUUCUUGAACUUcucuugcgccucuccuuaauuacuccccacucucucugucucucccuuucucuccguugguagagagagacaugaacggggagagagaacaggagcaggagcagcaagaagagGGUCAAGAAAGCUGUGGGAAGaaauggcaua
((((((..(((((((((((((((((((.(((((((((((((((((((...((.((((((....((..((((((((.((.((........)).)).)))))))).))..)))))).))....)))))..)).)).))))).))))).)))))))))))))))))))..))))))..

Structure

--      gc                   A     -     -  -  --     -uaa  a      acuc  uc        c  u  ucu 
  ugccau  cuUUCCACAGCUUUCUUGA CUUcu cuugc gc cu  cuccu    uu cucccc    uc  ugucucuc cu uc   c
  ||||||  ||||||||||||||||||| ||||| ||||| || ||  |||||    || ||||||    ||  |||||||| || ||    
  acggua  GAAGGGUGUCGAAAGAACU Ggaga gaacg cg gg  gagga    ag gagggg    ag  acagagag ga gg   c
au      aa                   G     a     a  a  ac     caag  a      --ca  -u        a  u  uug 

Annotation confidence Not enough data

Genome context

chr6: 353404393-353404567 [-]

Mature ata-miR396c-5p

• Accession: MIMAT0037170
• Description: Aegilops tauschii ata-miR396c-5p mature miRNA
• Sequence: 11 - UUCCACAGCUUUCUUGAACUU - 31
• Evidence: experimental ; Illumina [1]

Mature ata-miR396c-3p

• Accession: MIMAT0037171
• Description: Aegilops tauschii ata-miR396c-3p mature miRNA
• Sequence: 145 - GGUCAAGAAAGCUGUGGGAAG - 165
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95