miRBase entry: ata-MIR169f

Stem-loop ata-MIR169f


Accession
MI0031692
Description
Aegilops tauschii ata-MIR169f precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
1 open access papers mention ata-MIR169f
(1 sentences)

Sequence

gaguggaaugCAGCCAAGGAUGACUUGCCGAcagcacacaacaaggugguaguaaucuugccGGCAAGUCCGUCCUUGGCUACAccuugcucu
((((((..((.(((((((((((((((((((.((((.(((......)))))........)).)))))))).))))))))))).))..)))))).

Structure
-      aa  C           -        A  --------  a   aa 
 gagugg  ug AGCCAAGGAUG ACUUGCCG ca        gc cac  c
 ||||||  || ||||||||||| |||||||| ||        || |||   
 cucguu  AC UCGGUUCCUGC UGAACGGc gu        ug gug  a
u      cc  A           C        c  ucuaauga  -   ga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ata-miR169f-5p

Accession MIMAT0037178
Description Aegilops tauschii ata-miR169f-5p mature miRNA
Sequence 11 - CAGCCAAGGAUGACUUGCCGA - 31
Evidence experimental
Illumina [1]

Mature ata-miR169f-3p

Accession MIMAT0037179
Description Aegilops tauschii ata-miR169f-3p mature miRNA
Sequence 63 - GGCAAGUCCGUCCUUGGCUACA - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95