Stem-loop ata-MIR2118a

Accession

MI0031693

Description

Aegilops tauschii ata-MIR2118a precursor miRNA

Gene family

MIPF0000745; MIR2118

Literature search

1 open access papers mention ata-MIR2118a
(1 sentences)

Sequence

guugugugcuUUCCUAAUGUCUCCCAUUCCUAugguucuugagcacuccuuccucuuccuuuucgcuugugcaauagauuaauucauaaaccauaaauaugugugcacauaccuagauaaccugagaucuagaaggcuagucgagaagaggaagaaaagagagcuugagagcaguGGGAAUGGGAACAUGGAGGAAacccuaacu
((((.(.(.((((((.((((.((((((((((((.((((((((((.((((((((((((((.....(((((((((.((.((...................)).)))))))....((((((........)))))).)))).....).))))))))))....))).)))))))))).))))))))))))))))..)))))))).)))).

Structure

-    u u c      -A    C            g          a   ----          - uuuuc    -------------------------     a  g  uaauucau 
 guug g g uUUCCU  AUGU UCCCAUUCCUAu guucuugagc cuc    cuuccucuuc c     gcuu                         gugca ua au        a
 |||| | | ||||||  |||| |||||||||||| |||||||||| |||    |||||||||| |     ||||                         ||||| || ||        a
 caau c c aAAGGA  UACA AGGGUAAGGGug cgagaguucg gag    gaaggagaag g     cgga                         cacgu gu ua        a
u    c - -      GG    -            a          a   aaaa          a cugau    agaucuagaguccaauagauccaua     -  g  uaaauacc 

Annotation confidence Not enough data

Genome context

chr2: 441278647-441278851 [+]

Mature ata-miR2118a-5p

• Accession: MIMAT0037180
• Description: Aegilops tauschii ata-miR2118a-5p mature miRNA
• Sequence: 11 - UUCCUAAUGUCUCCCAUUCCUA - 32
• Evidence: experimental ; Illumina [1]

Mature ata-miR2118a-3p

• Accession: MIMAT0037181
• Description: Aegilops tauschii ata-miR2118a-3p mature miRNA
• Sequence: 176 - GGGAAUGGGAACAUGGAGGAA - 196
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95