miRBase entry: ata-MIR5062b

Stem-loop ata-MIR5062b


Accession
MI0031704
Description
Aegilops tauschii ata-MIR5062b precursor miRNA
Gene family
MIPF0001922; MIR5062


Sequence

gugaggucauGCGGAUUUUUCACCAAGAUUCAAGugguuaucuggaucuuuugacuuaagugcuccuaccacaauguaccuagcguuuuauuacccauguuuuuuuauuaucauauuguaccugggugcaauuaugugcaaguuauauguggucacuggauugcauguaacaaguaagguucacguagcuucuUGAACCUUAGGGAAAAGCCGCAUaacaccauua
(((..((.((((((.((((((.(((((.((((((.((((((.((((((((...((((............((((.(((((((((.((.................................)))))))))))....))))...(((((((((((((....))))))))))))))))))))))))).)))))).)))))).))).)))))))))))))).))..)))..

Structure
--   ag  c      A      A  -   A      u      c        uug    ---------------------aagugcuccuac    ---a         c  uuuauuacccauguu 
  gug  gu auGCGG UUUUUC CC AAG UUCAAG gguuau uggaucuu   acuu                                 caca    uguaccuag gu               u
  |||  || |||||| |||||| || ||| |||||| |||||| ||||||||   ||||                                 ||||    ||||||||| ||               u
  uac  ca UACGCC GAAAAG GG UUC AAGUuc ucgaug acuuggaa   ugaa                                 gugu    acguggguc ca               u
au   ca  a      -      -  A   C      u      c        ---    caauguacguuaggucacugguguauauugaac    auua         -  uguuauacuauuauu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ata-miR5062b-5p

Accession MIMAT0037202
Description Aegilops tauschii ata-miR5062b-5p mature miRNA
Sequence 11 - GCGGAUUUUUCACCAAGAUUCAAG - 34
Evidence experimental
Illumina [1]

Mature ata-miR5062b-3p

Accession MIMAT0037203
Description Aegilops tauschii ata-miR5062b-3p mature miRNA
Sequence 194 - UGAACCUUAGGGAAAAGCCGCAU - 216
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95