miRBase entry: ata-MIR169d

Stem-loop ata-MIR169d


Accession
MI0031706
Description
Aegilops tauschii ata-MIR169d precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
1 open access papers mention ata-MIR169d
(1 sentences)

Sequence

gaacgggaugCAGCCAAGGAUGACUUGCCGGcuccugguguugggaguucacugagcuuuagaguuagccGGCAAGUUGUCCUUGGCUACAccuaguucuc
(((((((.((.(((((((((((((((((((((((((((.(((.((......)).))).)))).)..)))))))))))))))))))))).))))).))))..

Structure
--    -   a  C                      -- -    u   g  ag 
  gaac ggg ug AGCCAAGGAUGACUUGCCGGcu  c cugg guu gg  u
  |||| ||| || ||||||||||||||||||||||  | |||| ||| ||   
  cuug ucc AC UCGGUUCCUGUUGAACGGccga  g gauu cga uc  u
cu    a   -  A                      uu a    u   g  ac 


Annotation confidence Not enough data
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Genome context
chr2: 452086951-452087051 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ata-MIR169d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ata-miR169d-5p

Accession MIMAT0037206
Description Aegilops tauschii ata-miR169d-5p mature miRNA
Sequence 11 - CAGCCAAGGAUGACUUGCCGG - 31
Evidence experimental
Illumina [1]

Mature ata-miR169d-3p

Accession MIMAT0037207
Description Aegilops tauschii ata-miR169d-3p mature miRNA
Sequence 71 - GGCAAGUUGUCCUUGGCUACA - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95