Stem-loop ata-MIR169a

Accession

MI0031707

Description

Aegilops tauschii ata-MIR169a precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

1 open access papers mention ata-MIR169a
(1 sentences)

Sequence

ccaucuucgaUAGCCAAGGAUGAUUUGCCUGUGaaacucccuuggcagccgagcucucugccacagagagcgguguccggcgguuccaUGGGCAAGUCACCCUGGCUACCcgagcaccu
.....((((.((((((.((.(((((((((((((.((((.((..((((.((..((((((((...)))))))))))))).)).)))).))))))))))))))).))))))..)))).....

Structure

ccauc    -a      A  A             a    c  uu    g  ga        c 
     uucg  UAGCCA GG UGAUUUGCCUGUG aacu cc  ggca cc  gcucucug  
     ||||  |||||| || ||||||||||||| |||| ||  |||| ||  |||||||| c
     gagc  AUCGGU CC ACUGAACGGGUac uugg gg  cugu gg  cgagagac  
uccac    CC      C  -             c    c  -c    -  --        a 

Annotation confidence Not enough data

Genome context

chr5: 446192523-446192641 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ata-MIR169a

Mature ata-miR169a-5p

• Accession: MIMAT0037208
• Description: Aegilops tauschii ata-miR169a-5p mature miRNA
• Sequence: 11 - UAGCCAAGGAUGAUUUGCCUGUG - 33
• Evidence: experimental ; Illumina [1]

Mature ata-miR169a-3p

• Accession: MIMAT0037209
• Description: Aegilops tauschii ata-miR169a-3p mature miRNA
• Sequence: 89 - UGGGCAAGUCACCCUGGCUACC - 110
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95