Stem-loop ata-MIR172c

Accession

MI0031714

Description

Aegilops tauschii ata-MIR172c precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

1 open access papers mention ata-MIR172c
(2 sentences)

Sequence

gauuucugguGUGGCAUCAUCAAGAUUCACACAauguauggcaugcaugcgaugcucucauccuuccccauccaugcaugcaugugaacuguaguuccguucaugcauggagauggauggauugaugagcuugcuugcucgcuagccagcguacuaugugugGGAAUCUUGAUGAUGCUGCAUcggugaucaa
((((.((((((((((((((((((((((((((((..(((((((..(((.((((.((((((((((.(((...((((((((((.(((.((((....))))))).))))))))))...))).))).))).)))))))).)))..)).......)))))..)))))..))))))))))))))))))))))).))))..

Structure

--    u                       --     au     -------  au   u    u    -   -   u   cca          c   u    u 
  gauu cugguGUGGCAUCAUCAAGAUUC  ACACA  guaug       gc  gca gcga gcuc uca ucc ucc   uccaugcaug aug gaac g
  |||| |||||||||||||||||||||||  |||||  |||||       ||  ||| |||| |||| ||| ||| |||   |||||||||| ||| ||||  
  cuag ggcUACGUCGUAGUAGUUCUAAG  ugugu  caugc       cg  cgu cguu cgag agu agg agg   agguacguac ugc cuug u
aa    u                       Gg     au     gaccgau  cu   u    -    u   u   u   uag          u   -    a 

Annotation confidence Not enough data

Genome context

chr3: 512073407-512073599 [-]

Mature ata-miR172c-5p

• Accession: MIMAT0037222
• Description: Aegilops tauschii ata-miR172c-5p mature miRNA
• Sequence: 11 - GUGGCAUCAUCAAGAUUCACACA - 33
• Evidence: experimental ; Illumina [1]

Mature ata-miR172c-3p

• Accession: MIMAT0037223
• Description: Aegilops tauschii ata-miR172c-3p mature miRNA
• Sequence: 163 - GGAAUCUUGAUGAUGCUGCAU - 183
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95