miRBase entry: ata-MIR2275c

Stem-loop ata-MIR2275c


Accession
MI0031716
Description
Aegilops tauschii ata-MIR2275c precursor miRNA
Gene family
MIPF0000797; MIR2275


Sequence

gcagaugaauuugAGUGUUGGAUGGGACCAAAUCuuacugccggguguggcaagauuugguuuccuccaauaucuuauguucauaugucagacgcuggguguuagcuacaagccuacaacaagugauaguuggauggacaccugggccugucucaagaaccuaaccucgcaagcugaaugugagauuuggauggaaccaaaucuucagcuauaguggcacaagaUUUGGUUUCCUCCAAUAUCUCAucuucaacug
.(((.((((..(((((((((((.(((((((((((((..(((((..(((((((((((((((((((.(((((.((((((((((((..(((..((.(.(((((.......(((.(((((((((........))))..........))))).))).......))))).).)))))...))))))))))))))))).)))))))))))))..)))))).))))).))))))))))))).))))))).))))..)))).)))

Structure
g   a    uu    -       U             ac     gg      --             c     u            -ua   ca  c c     guuagcu   a     ----------    aag 
 cag ugaa  ugAG UGUUGGA GGGACCAAAUCuu  ugccg  uguggc  aagauuugguuuc uccaa aucuuauguuca   ugu  ga g ugggu       aca gccua          caac   u
 ||| ||||  |||| ||||||| |||||||||||||  |||||  ||||||  ||||||||||||| ||||| ||||||||||||   |||  || | |||||       ||| |||||          ||||    
 guc acuu  ACUC AUAACCU CUUUGGUUUagaa  acggu  auaucg  uucuaaaccaagg agguu uagaguguaagu   acg  cu c aucca       ugu cgggu          guug   g
-   a    cu    U       C             -c     -g      ac             u     -            cga   --  c a     agaacuc   c     ccacagguag    aua 


Annotation confidence Not enough data
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Genome context
chr7: 117539141-117539396 [-]

Database links

Mature ata-miR2275c-5p

Accession MIMAT0037226
Description Aegilops tauschii ata-miR2275c-5p mature miRNA
Sequence 14 - AGUGUUGGAUGGGACCAAAUC - 34
Evidence experimental
Illumina [1]

Mature ata-miR2275c-3p

Accession MIMAT0037227
Description Aegilops tauschii ata-miR2275c-3p mature miRNA
Sequence 225 - UUUGGUUUCCUCCAAUAUCUCA - 246
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95