Stem-loop ata-MIR399a

Accession

MI0031723

Description

Aegilops tauschii ata-MIR399a precursor miRNA

Gene family

MIPF0000015; MIR399

Sequence

gugugaaucccaGGGCGCUUCUCCAUUGGCACGGcggcaugcaugcauguagccaggugaguugaagaagcuccaugcacggaagcuaccuagcuagccaugcugugcgUGCCAAAGGAGAAUUGCCCUGcgauucaccu
..(((((((.(((((((.((((((.((((((((((((((((...((...((((.((((..........((((((......)).)))))))).)))))))))))))).)))))))).)))))).))))))).)))))))..

Structure

gu       c       C      A        -        cau  aug    c    gaguugaaga    -  au 
  gugaauc caGGGCG UUCUCC UUGGCACG Gcggcaug   gc   uagc aggu          agcu cc  g
  ||||||| ||||||| |||||| |||||||| ||||||||   ||   |||| ||||          |||| ||   
  cacuuag GUCCCGU AAGAGG AACCGUgc ugucguac   cg   aucg ucca          ucga gg  c
uc       c       U      A        g        ---  ---    a    ----------    a  ca 

Annotation confidence Not enough data

Genome context

chr1: 436160654-436160793 [-]

Mature ata-miR399a-5p

• Accession: MIMAT0037240
• Description: Aegilops tauschii ata-miR399a-5p mature miRNA
• Sequence: 13 - GGGCGCUUCUCCAUUGGCACGG - 34
• Evidence: experimental ; Illumina [1]

Mature ata-miR399a-3p

• Accession: MIMAT0037241
• Description: Aegilops tauschii ata-miR399a-3p mature miRNA
• Sequence: 110 - UGCCAAAGGAGAAUUGCCCUG - 130
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95