Stem-loop ata-MIR164c

Accession

MI0031724

Description

Aegilops tauschii ata-MIR164c precursor miRNA

Gene family

MIPF0000045; MIR164

Sequence

aggaccgcgcUGGAGAAGCAGGGCACGUGCAugcaugcgggcgugcucgaucucauccugccuccgucggugggaucggagcugcuagcccugcacugcacugCACGUGUUCUUCUCCUCCAUCacggucuuuc
.((((((.(.(((((.((.(((((((((((((((((((((((..((....(((.((((((((......)))))))).)))...))..)))).))).)))).)))))))))))).)).))))).).))))))...

Structure

--a      c c     A  C            -    -   -    gu  ucga   c        uc 
   ggaccg g UGGAG AG AGGGCACGUGCA ugca ugc gggc  gc    ucu auccugcc  c
   |||||| | ||||| || |||||||||||| |||| ||| ||||  ||    ||| ||||||||   
   ucuggc C ACCUC UC UCUUGUGCACgu acgu acg cccg  cg    agg uagggugg  g
cuu      a U     C  U            c    c   u    au  -ucg   c        cu 

Annotation confidence Not enough data

Genome context

chr2: 58088902-58089035 [+]

Mature ata-miR164c-5p

• Accession: MIMAT0037242
• Description: Aegilops tauschii ata-miR164c-5p mature miRNA
• Sequence: 11 - UGGAGAAGCAGGGCACGUGCA - 31
• Evidence: experimental ; Illumina [1]

Mature ata-miR164c-3p

• Accession: MIMAT0037243
• Description: Aegilops tauschii ata-miR164c-3p mature miRNA
• Sequence: 104 - CACGUGUUCUUCUCCUCCAUC - 124
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95