miRBase entry: ata-MIR171b

Stem-loop ata-MIR171b


Accession
MI0031728
Description
Aegilops tauschii ata-MIR171b precursor miRNA
Gene family
MIPF0000030; MIR171_1


Sequence

ggagaguccgaUGUUGGCAUGGCUCAAUCAAAucgagugggcggcgaucgaggcgugaagauaugauuguuuaacucgaucUGAUUGAGCCGUGCCAAUAUCgcaagcuccu
((((..(.((((((((((((((((((((((.(((((((....((((((((...(.....)...))))))))..))))))).)))))))))))))))))))))).)..)))).

Structure
-    ag c                      A       gggc        agg g 
 ggag  u cgaUGUUGGCAUGGCUCAAUCA Aucgagu    ggcgaucg   c u
 ||||  | |||||||||||||||||||||| |||||||    ||||||||   | g
 ccuc  a gCUAUAACCGUGCCGAGUUAGU uagcuca    uuguuagu   g a
u    ga c                      c       --au        aua a 


Annotation confidence Not enough data
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Genome context
chr4: 39471666-39471777 [+]

Database links

Mature ata-miR171b-5p

Accession MIMAT0037250
Description Aegilops tauschii ata-miR171b-5p mature miRNA
Sequence 12 - UGUUGGCAUGGCUCAAUCAAA - 32
Evidence experimental
Illumina [1]

Mature ata-miR171b-3p

Accession MIMAT0037251
Description Aegilops tauschii ata-miR171b-3p mature miRNA
Sequence 82 - UGAUUGAGCCGUGCCAAUAUC - 102
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95