miRBase entry: ata-MIR5084

Stem-loop ata-MIR5084


Accession
MI0031730
Description
Aegilops tauschii ata-MIR5084 precursor miRNA
Gene family
MIPF0002026; MIR5084


Sequence

agacggguuaggAUCCUCUACAGUACUGUACGGUGCucuuagucacugccaugugggaccuggccccacauaucauccacacuacagcACCAUACGGUACUGCAGAGGAUCucaaccccuc
.((.(((((.(((((((((.((((((((((.((((((..((((...((..(((((((.......)))))))..)).....)))).)))))).)))))))))).))))))))).))))).))

Structure
a  c     a         A          C      cu    --cac  cc       ac 
 ga ggguu ggAUCCUCU CAGUACUGUA GGUGCu  uagu     ug  auguggg  c
 || ||||| ||||||||| |||||||||| ||||||  ||||     ||  |||||||  u
 cu cccaa uCUAGGAGA GUCAUGGCAU CCAcga  auca     ac  uacaccc  g
-  c     c         C          A      -c    caccu  ua       cg 


Annotation confidence Not enough data
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Genome context
AOCO02019250.1: 1986563-1986683 [-]

Database links

Mature ata-miR5084-5p

Accession MIMAT0037254
Description Aegilops tauschii ata-miR5084-5p mature miRNA
Sequence 13 - AUCCUCUACAGUACUGUACGGUGC - 36
Evidence experimental
Illumina [1]

Mature ata-miR5084-3p

Accession MIMAT0037255
Description Aegilops tauschii ata-miR5084-3p mature miRNA
Sequence 89 - ACCAUACGGUACUGCAGAGGAUC - 111
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95