miRBase entry: ata-MIR2118d

Stem-loop ata-MIR2118d


Accession
MI0031738
Description
Aegilops tauschii ata-MIR2118d precursor miRNA
Gene family
MIPF0000745; MIR2118

Literature search
1 open access papers mention ata-MIR2118d
(1 sentences)

Sequence

ucuuagagcggugggcaugggaacauagaggaaagccuagauuucuuggccucuuaauuuaggggcaaagauuguuuuguguuUUCCUGAUGCCUCCCAUGCCUAuaguucuuag
.((.(((((.((((((((((((.(((..(((((((((.((((.((((.((((((......)))))).))))..)))).).)))))))).)))..)))))))))))).))))).))

Structure
u  u     g            -a   ag        - u    -u    g      ua 
 cu agagc gugggcauggga  cau  aggaaagc c agau  ucuu gccucu  a
 || ||||| ||||||||||||  |||  |||||||| | ||||  |||| ||||||   
 ga ucuug uAUCCGUACCCU  GUA  UCCUUuug g uuug  agaa cgggga  u
-  u     a            CC   -G        u u    uu    a      uu 


Annotation confidence Not enough data
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Genome context
chr5: 22046047-22046161 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ata-MIR2118d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ata-miR2118d-3p

Accession MIMAT0037258
Description Aegilops tauschii ata-miR2118d-3p mature miRNA
Sequence 84 - UUCCUGAUGCCUCCCAUGCCUA - 105
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95