miRBase entry: rno-mir-434-2

Stem-loop rno-mir-434-2


Accession
MI0031771
Description
Rattus norvegicus rno-mir-434-2 precursor miRNA

Literature search
7 open access papers mention rno-mir-434-2
(92 sentences)

Sequence

5024799 reads, 3702 reads per million, 487 experiments
guuugaaccacAGCUCGACUCAUGGUUUGAACCAuugucaaacucguggUUUGAACCAUCACUCGACUCCUgguuugaauc
((((((((((.((.((((...((((((((((((((.((...))..))))))))))))))...))))))..)))))))))).

Structure
-          -c  C    CUC              -u  c 
 guuugaacca  AG UCGA   AUGGUUUGAACCAu  gu  
 ||||||||||  || ||||   ||||||||||||||  || a
 uaaguuuggU  UC AGCU   UACCAAGUUUggug  ca  
c          CC  -    CAC              cu  a 


Annotation confidence High
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Genome context
chr6: 133716248-133716328 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from rno-mir-434-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-434-5p

Accession MIMAT0017307
Description Rattus norvegicus rno-miR-434-5p mature miRNA
Sequence 12 - AGCUCGACUCAUGGUUUGAACCA - 34
Evidence experimental
SOLiD [2]

Mature rno-miR-434-3p

Accession MIMAT0005315
Description Rattus norvegicus rno-miR-434-3p mature miRNA
Sequence 50 - UUUGAACCAUCACUCGACUCCU - 71
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249