miRBase entry: rno-mir-598-2

Stem-loop rno-mir-598-2


Accession
MI0031774
Description
Rattus norvegicus rno-mir-598-2 precursor miRNA
Gene family
MIPF0000393; mir-598

Literature search
2 open access papers mention rno-mir-598-2
(4 sentences)

Sequence

70785 reads, 102 reads per million, 429 experiments
gcugaugcugGCGGUGAUGCCGAUGGUGCGAGcugaaaaugggcugcUACGUCAUCGUCGUCAUCGUUAucaucaucau
(.(((((.(((((((((((.(((((((((.((((.......)))))).))..))))).))))))))))).))))).)..

Structure
-- c     c           C     --  -  G    ga 
  g ugaug ugGCGGUGAUG CGAUG  GU GC AGcu  a
  | ||||| ||||||||||| |||||  || || ||||  a
  c acuac AUUGCUACUGC GCUAC  CA cg ucgg  a
ua u     u           U     UG  U  -    gu 


Annotation confidence High
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Genome context
chr15: 47057496-47057574 [+]

Database links

Mature rno-miR-598-5p

Accession MIMAT0005324
Description Rattus norvegicus rno-miR-598-5p mature miRNA
Sequence 11 - GCGGUGAUGCCGAUGGUGCGAG - 32
Evidence experimental
cloned [1], SOLiD [2]

Mature rno-miR-598-3p

Accession MIMAT0005325
Description Rattus norvegicus rno-miR-598-3p mature miRNA
Sequence 48 - UACGUCAUCGUCGUCAUCGUUA - 69
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249