Stem-loop rno-mir-466b-3

Accession

MI0031779

Description

Rattus norvegicus rno-mir-466b-3 precursor miRNA

Literature search

15 open access papers mention rno-mir-466b-3
(115 sentences)

Sequence

1835 reads, 5.0 reads per million, 334 experiments

cauguguauauAUGUGUGUGUGUAUGUCCAUGUguguauaugaauauacaUACACACACACAUACACACAcgugcaagcacacaca
..(((((...(((((((((((((.(((...((((((((((....))))))))))...))).)))))))))))))...)))))....

Structure

--ca     aua             A   CCA          u 
    ugugu   uAUGUGUGUGUGU UGU   UGUguguaua g
    |||||   ||||||||||||| |||   ||||||||||  
    acacg   gugcACACACAUA ACA   ACAUacauau a
acac     aac             C   CAC          a 

Annotation confidence Medium

Genome context

chr17: 72069566-72069651 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-466b-3

Mature rno-miR-466b-5p

• Accession: MIMAT0005278
• Description: Rattus norvegicus rno-miR-466b-5p mature miRNA
• Sequence: 12 - AUGUGUGUGUGUAUGUCCAUGU - 33
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-466b-3p

• Accession: MIMAT0017285
• Description: Rattus norvegicus rno-miR-466b-3p mature miRNA
• Sequence: 51 - UACACACACACAUACACACA - 70
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249