miRBase entry: pal-mir-133a-1

Stem-loop pal-mir-133a-1


Accession
MI0032375
Description
Pteropus alecto pal-mir-133a-1 precursor miRNA


Sequence

AGCUGGUAAAAUGGAACCAAAUcaacuguucgauggauUUGGUCCCCUUCAACCAGCUGU
(((((((..((.((.((((((((............)))))))).)).))..)))))))..

Structure
--       AA  U  A        aacug 
  AGCUGGU  AA GG ACCAAAUc     u
  |||||||  || || ||||||||      
  UCGACCA  UU CC UGGUUuag     u
UG       AC  C  C        guagc 


Annotation confidence Not enough data
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Genome context
KB031072.1: 39932821-39932880 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pal-mir-133a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-133a-5p

Accession MIMAT0039874
Description Pteropus alecto pal-miR-133a-5p mature miRNA
Sequence 1 - AGCUGGUAAAAUGGAACCAAAU - 22
Evidence experimental
Illumina [1]

Mature pal-miR-133a-3p

Accession MIMAT0039875
Description Pteropus alecto pal-miR-133a-3p mature miRNA
Sequence 39 - UUGGUCCCCUUCAACCAGCUGU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682