miRBase entry: pal-mir-379

Stem-loop pal-mir-379


Accession
MI0032382
Description
Pteropus alecto pal-mir-379 precursor miRNA


Sequence

UGGUAGACUAUGGAACGUAGGcuuugugauuuuugaccUAUGUAACAUGGUCCACUAAC
((((.(((((((..((((((((............).)))))))..))))))).))))..

Structure
--    A       GA       - uuugu 
  UGGU GACUAUG  ACGUAGG c     g
  |||| |||||||  ||||||| |      
  AUCA CUGGUAC  UGUAUcc g     a
CA    C       AA       a uuuuu 


Annotation confidence Not enough data
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Genome context
KB031153.1: 22067500-22067558 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from pal-mir-379
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-379-5p

Accession MIMAT0039886
Description Pteropus alecto pal-miR-379-5p mature miRNA
Sequence 1 - UGGUAGACUAUGGAACGUAGG - 21
Evidence experimental
Illumina [1]

Mature pal-miR-379-3p

Accession MIMAT0039887
Description Pteropus alecto pal-miR-379-3p mature miRNA
Sequence 39 - UAUGUAACAUGGUCCACUAAC - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682