miRBase entry: pal-mir-34b

Stem-loop pal-mir-34b


Accession
MI0032384
Description
Pteropus alecto pal-mir-34b precursor miRNA


Sequence

AGGCAGUGUAAUUAGCUGAUUGUacucuggugcuuacaAUCACUAACUCCACUGCCAUC
.(((((((...((((.((((((((..(....)..))))))))))))...)))))))...

Structure
--A       UAA    C        cu u 
   GGCAGUG   UUAG UGAUUGUa  c g
   |||||||   |||| ||||||||  |  
   CCGUCAC   AAUC ACUAacau  g g
CUA       CUC    -        uc u 


Annotation confidence Not enough data
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Genome context
KB030667.1: 5971582-5971640 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pal-mir-34b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-34b-5p

Accession MIMAT0039888
Description Pteropus alecto pal-miR-34b-5p mature miRNA
Sequence 1 - AGGCAGUGUAAUUAGCUGAUUGU - 23
Evidence experimental
Illumina [1]

Mature pal-miR-34b-3p

Accession MIMAT0039889
Description Pteropus alecto pal-miR-34b-3p mature miRNA
Sequence 39 - AUCACUAACUCCACUGCCAUC - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682