miRBase entry: pal-mir-200c

Stem-loop pal-mir-200c


Accession
MI0032396
Description
Pteropus alecto pal-mir-200c precursor miRNA


Sequence

CGUCUUACCCAGCAGUGUUUGggugcugguugggagucucUAAUACUGCCGGGUAAUGAUGGA
((((((((((.((((((((.(((.(((.......)))))).)))))))).)))))).))))..

Structure
--    -      A        U   u   gg 
  CGUC UUACCC GCAGUGUU Ggg gcu  u
  |||| |||||| |||||||| ||| |||  u
  GUAG AAUGGG CGUCAUAA cuc uga  g
AG    U      C        U   -   gg 


Annotation confidence Not enough data
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Genome context
KB030754.1: 13552801-13552863 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pal-mir-200c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-200c-5p

Accession MIMAT0039911
Description Pteropus alecto pal-miR-200c-5p mature miRNA
Sequence 1 - CGUCUUACCCAGCAGUGUUUG - 21
Evidence experimental
Illumina [1]

Mature pal-miR-200c-3p

Accession MIMAT0039912
Description Pteropus alecto pal-miR-200c-3p mature miRNA
Sequence 41 - UAAUACUGCCGGGUAAUGAUGGA - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682