Stem-loop pal-mir-9988

Accession

MI0032418

Description

Pteropus alecto pal-mir-9988 precursor miRNA

Sequence

UGCUAGGGCUAGAGAGCGAGUGCagauacagaugaagcUUCGCUCCCUUGCCCUUUGCU
.((.(((((.((.(((((((.((.............))))))))).)).)))))..)).

Structure

U  -U     U  A       U  agaua 
 GC  AGGGC AG GAGCGAG GC     c
 ||  ||||| || ||||||| ||     a
 CG  UCCCG UC CUCGCUU cg     g
U  UU     U  C       -  aagua 

Annotation confidence Not enough data

Genome context

KB030676.1: 1605188-1605246 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pal-mir-9988

Mature pal-miR-9988-5p

• Accession: MIMAT0039953
• Description: Pteropus alecto pal-miR-9988-5p mature miRNA
• Sequence: 1 - UGCUAGGGCUAGAGAGCGAGUGC - 23
• Evidence: experimental ; Illumina [1]

Mature pal-miR-9988-3p

• Accession: MIMAT0039954
• Description: Pteropus alecto pal-miR-9988-3p mature miRNA
• Sequence: 39 - UUCGCUCCCUUGCCCUUUGCU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682