miRBase entry: pal-mir-20b

Stem-loop pal-mir-20b


Accession
MI0032444
Description
Pteropus alecto pal-mir-20b precursor miRNA


Sequence

CAAAGUGCUCAUAGUGCAGGUAGuuuuggcauuacucuACUGUAGUGUGGGCACUUCC
..(((((((((((.(((((..(((.........)))...))))).)))))))))))..

Structure
CA           G     -GU   uuu 
  AAGUGCUCAUA UGCAG   AGu   g
  ||||||||||| |||||   |||   g
  UUCACGGGUGU AUGUC   uca   c
CC           G     Auc   uua 


Annotation confidence Not enough data
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Genome context
KB031071.1: 682795-682852 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from pal-mir-20b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-20b-5p

Accession MIMAT0040005
Description Pteropus alecto pal-miR-20b-5p mature miRNA
Sequence 1 - CAAAGUGCUCAUAGUGCAGGUAG - 23
Evidence experimental
Illumina [1]

Mature pal-miR-20b-3p

Accession MIMAT0040006
Description Pteropus alecto pal-miR-20b-3p mature miRNA
Sequence 39 - ACUGUAGUGUGGGCACUUCC - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682