miRBase entry: pal-mir-380

Stem-loop pal-mir-380


Accession
MI0032466
Description
Pteropus alecto pal-mir-380 precursor miRNA


Sequence

AUGGUUGACCAUAGGACAUGCgcuaucucugugucgUAUGUAAUAUGGUCCACGUCU
...((.(((((((..(((((((.(((....))).)))))))..))))))).))....

Structure
-AUG  U       GG       c   c 
    GU GACCAUA  ACAUGCg uau u
    || |||||||  ||||||| |||  
    CA CUGGUAU  UGUAUgc gug c
UCUG  C       AA       u   u 


Annotation confidence Not enough data
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Genome context
KB031153.1: 22070434-22070490 [+]
Clustered miRNAs
9 other miRNAs are < 10 kb from pal-mir-380
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-380-5p

Accession MIMAT0040047
Description Pteropus alecto pal-miR-380-5p mature miRNA
Sequence 1 - AUGGUUGACCAUAGGACAUGC - 21
Evidence experimental
Illumina [1]

Mature pal-miR-380-3p

Accession MIMAT0040048
Description Pteropus alecto pal-miR-380-3p mature miRNA
Sequence 37 - UAUGUAAUAUGGUCCACGUCU - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682