miRBase entry: pal-mir-329b

Stem-loop pal-mir-329b


Accession
MI0032472
Description
Pteropus alecto pal-mir-329b precursor miRNA


Sequence

AGAGGUUUUCUGGGUUUCUGUUUcuuuaaugaggaugaAACACACCUGGUUAACCUCUUU
(((((((..((((((...((((((.((......)).)))))).))))))..)))))))..

Structure
--       UU      UUC      u  aa 
  AGAGGUU  CUGGGU   UGUUUc uu  u
  |||||||  ||||||   |||||| ||   
  UCUCCAA  GGUCCA   ACAAag ag  g
UU       UU      --C      u  ga 


Annotation confidence Not enough data
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Genome context
KB031153.1: 22072221-22072280 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from pal-mir-329b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-329b-5p

Accession MIMAT0040059
Description Pteropus alecto pal-miR-329b-5p mature miRNA
Sequence 1 - AGAGGUUUUCUGGGUUUCUGUUU - 23
Evidence experimental
Illumina [1]

Mature pal-miR-329b-3p

Accession MIMAT0040060
Description Pteropus alecto pal-miR-329b-3p mature miRNA
Sequence 39 - AACACACCUGGUUAACCUCUUU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682