miRBase entry: pal-mir-214

Stem-loop pal-mir-214


Accession
MI0032476
Description
Pteropus alecto pal-mir-214 precursor miRNA


Sequence

UGCCUGUCUACACUUGCUGUGCagaacauccgcucaccuguACAGCAGGCACAGACAGGCAGU
(((((((((...((((((((((((.............))))))))))))...)))))))))..

Structure
--         ACA            aacau 
  UGCCUGUCU   CUUGCUGUGCag     c
  |||||||||   ||||||||||||     c
  ACGGACAGA   GGACGACAuguc     g
UG         CAC            cacuc 


Annotation confidence Not enough data
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Genome context
KB030474.1: 15172901-15172963 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from pal-mir-214
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-214-5p

Accession MIMAT0040067
Description Pteropus alecto pal-miR-214-5p mature miRNA
Sequence 1 - UGCCUGUCUACACUUGCUGUGC - 22
Evidence experimental
Illumina [1]

Mature pal-miR-214-3p

Accession MIMAT0040068
Description Pteropus alecto pal-miR-214-3p mature miRNA
Sequence 42 - ACAGCAGGCACAGACAGGCAGU - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682