miRBase entry: pal-mir-20a

Stem-loop pal-mir-20a


Accession
MI0032513
Description
Pteropus alecto pal-mir-20a precursor miRNA


Sequence

UAAAGUGCUUAUAGUGCAGGUAGuguuuaguuaucuACUGCAUUAUGAGCACUUAAAGU
..(((((((((((((((((.(((...........)))))))))))))))))))).....

Structure
---UA                 G   uguu 
     AAGUGCUUAUAGUGCAG UAG    u
     ||||||||||||||||| |||    a
     UUCACGAGUAUUACGUC Auc    g
UGAAA                 -   uauu 


Annotation confidence Not enough data
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Genome context
KB030714.1: 19601717-19601775 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from pal-mir-20a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-20a-5p

Accession MIMAT0040138
Description Pteropus alecto pal-miR-20a-5p mature miRNA
Sequence 1 - UAAAGUGCUUAUAGUGCAGGUAG - 23
Evidence experimental
Illumina [1]

Mature pal-miR-20a-3p

Accession MIMAT0040139
Description Pteropus alecto pal-miR-20a-3p mature miRNA
Sequence 37 - ACUGCAUUAUGAGCACUUAAAGU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682