miRBase entry: pal-mir-376d

Stem-loop pal-mir-376d


Accession
MI0032551
Description
Pteropus alecto pal-mir-376d precursor miRNA

Literature search
1 open access papers mention pal-mir-376d
(1 sentences)

Sequence

GUAGAUUUUCCUUCUAUGAUUAcgugguugaugguugAUCGUAGAGGAAAAUCCACGU
((.(((((((((.((((((((((((.....)))..)))))))))))))))))).))..

Structure
--  A         U         --   g 
  GU GAUUUUCCU CUAUGAUUA  cgu g
  || ||||||||| |||||||||  ||| u
  CA CUAAAAGGA GAUGCUAgu  gua u
UG  C         -         ug   g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KB031153.1: 22084388-22084445 [+]
Clustered miRNAs
13 other miRNAs are < 10 kb from pal-mir-376d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-376d-5p

Accession MIMAT0040208
Description Pteropus alecto pal-miR-376d-5p mature miRNA
Sequence 1 - GUAGAUUUUCCUUCUAUGAUUA - 22
Evidence experimental
Illumina [1]

Mature pal-miR-376d-3p

Accession MIMAT0040209
Description Pteropus alecto pal-miR-376d-3p mature miRNA
Sequence 38 - AUCGUAGAGGAAAAUCCACGU - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682