Stem-loop pal-mir-18a

Accession

MI0032559

Description

Pteropus alecto pal-mir-18a precursor miRNA

Sequence

UAAGGUGCAUCUAGUGCAGAUAgugaaguagauuagcaucUACUGCCCUAAGUGCUCCUUCU
.((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).))))..

Structure

-U    U    C   U    A   -  aa u 
  AAGG GCAU UAG GCAG UAg ug  g a
  |||| |||| ||| |||| ||| ||  | g
  UUCC CGUG AUC CGUC AUc ac  u a
UC    U    A   C    -   u  ga u 

Annotation confidence Not enough data

Genome context

KB030714.1: 19601408-19601469 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from pal-mir-18a

Mature pal-miR-18a-5p

• Accession: MIMAT0040222
• Description: Pteropus alecto pal-miR-18a-5p mature miRNA
• Sequence: 1 - UAAGGUGCAUCUAGUGCAGAUA - 22
• Evidence: experimental ; Illumina [1]

Mature pal-miR-18a-3p

• Accession: MIMAT0040223
• Description: Pteropus alecto pal-miR-18a-3p mature miRNA
• Sequence: 41 - UACUGCCCUAAGUGCUCCUUCU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682