miRBase entry: pal-mir-10006-2

Stem-loop pal-mir-10006-2


Accession
MI0032598
Description
Pteropus alecto pal-mir-10006-2 precursor miRNA


Sequence

ACUGAUGUGAUUGUAUAGGGCUcagugagaugugagCCCUAUACAAUCACAUCAGUUA
((((((((((((((((((((((((........))))))))))))))))))))))))..

Structure
--                        gug 
  ACUGAUGUGAUUGUAUAGGGCUca   a
  ||||||||||||||||||||||||    
  UGACUACACUAACAUAUCCCgagu   g
AU                        gua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KB030567.1: 2252951-2253008 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pal-mir-10006-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-10006-5p

Accession MIMAT0040296
Description Pteropus alecto pal-miR-10006-5p mature miRNA
Sequence 1 - ACUGAUGUGAUUGUAUAGGGCU - 22
Evidence experimental
Illumina [1]

Mature pal-miR-10006-3p

Accession MIMAT0040297
Description Pteropus alecto pal-miR-10006-3p mature miRNA
Sequence 37 - CCCUAUACAAUCACAUCAGUUA - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682